This document compares the results of at least 2 CASAL model configurations (base and at least one sensitivity) and up to 6 Casal2 model configurations (3 BetaDiff and 3 ADOL-C).
The CASAL model sensitivity 1 has a smaller minimisation tolerance value than the CASAL base model (1e-8 vs. 2e-6).
The Casal2 ADOL-C and BetaDiff low tolerance models have the same tolerance values than the CASAL base model (1e-8 vs. 2e-6).
The main characteristics of the Test Case SCI (Scampi) CASAL model are:
Observation data include:
Parameters estimated include:
## [1] "Fri Sep 9 12:07:44 2022"
## R version 3.6.0 (2019-04-26)
## Platform: x86_64-redhat-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so
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## locale:
## [1] LC_CTYPE=en_GB.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB.UTF-8 LC_COLLATE=en_GB.UTF-8
## [5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_GB.UTF-8
## [7] LC_PAPER=en_GB.UTF_8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] Casal2_22.09 casal_2.30 devtools_2.4.4 usethis_2.1.6 rlist_0.4.6.2
## [6] ggthemes_4.2.4 gridExtra_2.3 coda_0.19-4 ggmcmc_1.5.1.1 ggplot2_3.3.6
## [11] tidyr_1.2.1 huxtable_5.5.0 dplyr_1.0.10 plyr_1.8.7
##
## loaded via a namespace (and not attached):
## [1] Rcpp_1.0.9 lattice_0.20-38 prettyunits_1.1.1 ps_1.7.1
## [5] assertthat_0.2.1 digest_0.6.29 utf8_1.2.2 mime_0.12
## [9] R6_2.5.1 evaluate_0.16 pillar_1.8.1 rlang_1.0.5
## [13] data.table_1.14.2 miniUI_0.1.1.1 urlchecker_1.0.1 callr_3.7.2
## [17] jquerylib_0.1.4 rmarkdown_2.16 stringr_1.4.1 htmlwidgets_1.5.4
## [21] munsell_0.5.0 shiny_1.7.2 compiler_3.6.0 httpuv_1.6.6
## [25] xfun_0.32 pkgconfig_2.0.3 pkgbuild_1.3.1 htmltools_0.5.3
## [29] tidyselect_1.1.2 tibble_3.1.8 reshape_0.8.9 fansi_1.0.3
## [33] crayon_1.5.1 withr_2.5.0 later_1.3.0 grid_3.6.0
## [37] jsonlite_1.8.0 xtable_1.8-4 GGally_2.1.2 gtable_0.3.1
## [41] lifecycle_1.0.1 magrittr_2.0.3 scales_1.2.1 cli_3.4.0
## [45] stringi_1.7.8 cachem_1.0.6 remotes_2.4.2 fs_1.5.2
## [49] promises_1.2.0.1 bslib_0.4.0 ellipsis_0.3.2 generics_0.1.3
## [53] vctrs_0.4.1 RColorBrewer_1.1-3 tools_3.6.0 glue_1.6.2
## [57] purrr_0.3.4 pkgload_1.3.0 processx_3.7.0 fastmap_1.1.0
## [61] yaml_2.3.5 colorspace_2.0-3 sessioninfo_1.2.2 memoise_2.0.1
## [65] knitr_1.40 profvis_0.3.7 sass_0.4.2
source('../../R-functions/report_read_in_CASAL_MPD_files.R')
source('../../R-functions/report_read_in_Casal2_MPD_files.R')
Tables of parameter estimates and objective function components for the CASAL and Casal2 model MPD results
| rownames | Base_Model | Sensitivity_1 | Percent_Diff |
|---|---|---|---|
| initialization.B0 | 2106.00000 | 2106.00000 | 0.000 |
| growth[1].minsigma_male | 4.51900 | 4.51900 | 0.000 |
| recruitment.YCS1 | 0.26100 | 0.26100 | 0.000 |
| recruitment.YCS2 | 0.28190 | 0.28190 | 0.000 |
| recruitment.YCS3 | 0.35370 | 0.35370 | 0.000 |
| recruitment.YCS4 | 0.54940 | 0.54940 | 0.000 |
| recruitment.YCS5 | 3.08000 | 3.08000 | 0.000 |
| recruitment.YCS6 | 0.61570 | 0.61570 | 0.000 |
| recruitment.YCS7 | 0.60020 | 0.60020 | 0.000 |
| recruitment.YCS8 | 0.50630 | 0.50630 | 0.000 |
| recruitment.YCS9 | 0.31460 | 0.31460 | 0.000 |
| recruitment.YCS10 | 0.38550 | 0.38550 | 0.000 |
| recruitment.YCS11 | 0.39680 | 0.39680 | 0.000 |
| recruitment.YCS12 | 0.37270 | 0.37270 | 0.000 |
| recruitment.YCS13 | 0.49890 | 0.49890 | 0.000 |
| recruitment.YCS14 | 0.37530 | 0.37530 | 0.000 |
| recruitment.YCS15 | 0.49940 | 0.49940 | 0.000 |
| recruitment.YCS16 | 0.53520 | 0.53520 | 0.000 |
| recruitment.YCS17 | 0.59340 | 0.59340 | 0.000 |
| recruitment.YCS18 | 0.36560 | 0.36560 | 0.000 |
| recruitment.YCS19 | 0.59920 | 0.59920 | 0.000 |
| recruitment.YCS20 | 0.46420 | 0.46420 | 0.000 |
| recruitment.YCS21 | 0.49390 | 0.49390 | 0.000 |
| recruitment.YCS22 | 0.55130 | 0.55130 | 0.000 |
| recruitment.YCS23 | 0.98750 | 0.98750 | 0.000 |
| recruitment.YCS24 | 0.53080 | 0.53080 | 0.000 |
| recruitment.YCS25 | 0.88540 | 0.88540 | 0.000 |
| recruitment.YCS26 | 0.91310 | 0.91310 | 0.000 |
| recruitment.YCS27 | 0.51160 | 0.51160 | 0.000 |
| recruitment.YCS28 | 0.64290 | 0.64290 | 0.000 |
| recruitment.YCS29 | 0.44980 | 0.44990 | -0.022 |
| recruitment.YCS30 | 0.62760 | 0.62760 | 0.000 |
| recruitment.YCS31 | 0.58150 | 0.58150 | 0.000 |
| recruitment.YCS32 | 0.55560 | 0.55550 | 0.018 |
| recruitment.YCS33 | 0.93870 | 0.93870 | 0.000 |
| recruitment.YCS34 | 1.41700 | 1.41700 | 0.000 |
| recruitment.YCS35 | 0.39340 | 0.39340 | 0.000 |
| recruitment.YCS36 | 0.47900 | 0.47900 | 0.000 |
| recruitment.YCS37 | 0.54990 | 0.54980 | 0.018 |
| maturity_props.all1 | 30.12000 | 30.12000 | 0.000 |
| maturity_props.all2 | 7.09300 | 7.09300 | 0.000 |
| selectivity[FishingSel_1].female1 | 43.92000 | 43.92000 | 0.000 |
| selectivity[FishingSel_1].female2 | 16.37000 | 16.37000 | 0.000 |
| selectivity[FishingSel_1].female3 | 0.85520 | 0.85520 | 0.000 |
| selectivity[FishingSel_1].female4 | 1.00000 | 1.00000 | 0.000 |
| selectivity[FishingSel_2].female1 | 45.43000 | 45.43000 | 0.000 |
| selectivity[FishingSel_2].female2 | 20.02000 | 20.02000 | 0.000 |
| selectivity[FishingSel_2].female3 | 0.50660 | 0.50660 | 0.000 |
| selectivity[FishingSel_2].female4 | 1.00000 | 1.00000 | 0.000 |
| selectivity[TrawlSurveySel_1].female1 | 30.69000 | 30.69000 | 0.000 |
| selectivity[TrawlSurveySel_1].female2 | 20.77000 | 20.77000 | 0.000 |
| selectivity[TrawlSurveySel_1].female3 | 1.12900 | 1.12900 | 0.000 |
| selectivity[TrawlSurveySel_1].female4 | 1.00000 | 1.00000 | 0.000 |
| selectivity[TrawlSurveySel_2].female1 | 36.98000 | 36.98000 | 0.000 |
| selectivity[TrawlSurveySel_2].female2 | 16.94000 | 16.94000 | 0.000 |
| selectivity[TrawlSurveySel_2].female3 | 1.08700 | 1.08700 | 0.000 |
| selectivity[TrawlSurveySel_2].female4 | 1.00000 | 1.00000 | 0.000 |
| growth[1].g_male1 | 13.86000 | 13.86000 | 0.000 |
| growth[1].g_male2 | 2.84700 | 2.84700 | 0.000 |
| growth[1].g_female1 | 13.42000 | 13.42000 | 0.000 |
| growth[1].g_female2 | 0.92490 | 0.92490 | 0.000 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
|---|---|---|---|---|---|---|
| process[Recruitment].b0 | 2105.51000 | 2107.57000 | 2105.51000 | 2105.51000 | 2107.57000 | 2105.51000 |
| growth_increment[female_growth].min_sigma | 4.51884 | 4.59666 | 4.51885 | 4.51884 | 4.59666 | 4.51885 |
| process[Recruitment].recruitment_multipliers{1986} | 0.26103 | 0.26061 | 0.26104 | 0.26103 | 0.26061 | 0.26104 |
| process[Recruitment].recruitment_multipliers{1987} | 0.28188 | 0.28134 | 0.28188 | 0.28188 | 0.28134 | 0.28188 |
| process[Recruitment].recruitment_multipliers{1988} | 0.35365 | 0.35004 | 0.35365 | 0.35365 | 0.35004 | 0.35365 |
| process[Recruitment].recruitment_multipliers{1989} | 0.54947 | 0.52944 | 0.54944 | 0.54947 | 0.52944 | 0.54944 |
| process[Recruitment].recruitment_multipliers{1990} | 3.07992 | 3.14872 | 3.07993 | 3.07992 | 3.14872 | 3.07993 |
| process[Recruitment].recruitment_multipliers{1991} | 0.61596 | 0.60963 | 0.61598 | 0.61596 | 0.60963 | 0.61598 |
| process[Recruitment].recruitment_multipliers{1992} | 0.60021 | 0.59400 | 0.60020 | 0.60021 | 0.59400 | 0.60020 |
| process[Recruitment].recruitment_multipliers{1993} | 0.50628 | 0.50365 | 0.50628 | 0.50628 | 0.50365 | 0.50628 |
| process[Recruitment].recruitment_multipliers{1994} | 0.31465 | 0.31539 | 0.31465 | 0.31465 | 0.31539 | 0.31465 |
| process[Recruitment].recruitment_multipliers{1995} | 0.38549 | 0.38173 | 0.38549 | 0.38549 | 0.38173 | 0.38549 |
| process[Recruitment].recruitment_multipliers{1996} | 0.39678 | 0.39896 | 0.39678 | 0.39678 | 0.39896 | 0.39678 |
| process[Recruitment].recruitment_multipliers{1997} | 0.37269 | 0.37413 | 0.37269 | 0.37269 | 0.37413 | 0.37269 |
| process[Recruitment].recruitment_multipliers{1998} | 0.49890 | 0.49986 | 0.49890 | 0.49890 | 0.49986 | 0.49890 |
| process[Recruitment].recruitment_multipliers{1999} | 0.37530 | 0.37426 | 0.37530 | 0.37530 | 0.37426 | 0.37530 |
| process[Recruitment].recruitment_multipliers{2000} | 0.49939 | 0.50199 | 0.49939 | 0.49939 | 0.50199 | 0.49939 |
| process[Recruitment].recruitment_multipliers{2001} | 0.53521 | 0.53824 | 0.53521 | 0.53521 | 0.53824 | 0.53521 |
| process[Recruitment].recruitment_multipliers{2002} | 0.59334 | 0.59800 | 0.59334 | 0.59334 | 0.59800 | 0.59334 |
| process[Recruitment].recruitment_multipliers{2003} | 0.36562 | 0.36432 | 0.36562 | 0.36562 | 0.36432 | 0.36562 |
| process[Recruitment].recruitment_multipliers{2004} | 0.59914 | 0.60293 | 0.59914 | 0.59914 | 0.60293 | 0.59914 |
| process[Recruitment].recruitment_multipliers{2005} | 0.46422 | 0.46358 | 0.46423 | 0.46422 | 0.46358 | 0.46423 |
| process[Recruitment].recruitment_multipliers{2006} | 0.49389 | 0.49422 | 0.49389 | 0.49389 | 0.49422 | 0.49389 |
| process[Recruitment].recruitment_multipliers{2007} | 0.55124 | 0.55346 | 0.55125 | 0.55124 | 0.55346 | 0.55125 |
| process[Recruitment].recruitment_multipliers{2008} | 0.98745 | 0.99690 | 0.98745 | 0.98745 | 0.99690 | 0.98745 |
| process[Recruitment].recruitment_multipliers{2009} | 0.53079 | 0.53290 | 0.53080 | 0.53079 | 0.53290 | 0.53080 |
| process[Recruitment].recruitment_multipliers{2010} | 0.88537 | 0.88413 | 0.88537 | 0.88537 | 0.88413 | 0.88537 |
| process[Recruitment].recruitment_multipliers{2011} | 0.91311 | 0.92624 | 0.91312 | 0.91311 | 0.92624 | 0.91312 |
| process[Recruitment].recruitment_multipliers{2012} | 0.51160 | 0.50437 | 0.51161 | 0.51160 | 0.50437 | 0.51161 |
| process[Recruitment].recruitment_multipliers{2013} | 0.64287 | 0.64713 | 0.64286 | 0.64287 | 0.64713 | 0.64286 |
| process[Recruitment].recruitment_multipliers{2014} | 0.44984 | 0.45272 | 0.44985 | 0.44984 | 0.45272 | 0.44985 |
| process[Recruitment].recruitment_multipliers{2015} | 0.62763 | 0.62466 | 0.62761 | 0.62763 | 0.62466 | 0.62761 |
| process[Recruitment].recruitment_multipliers{2016} | 0.58153 | 0.58255 | 0.58154 | 0.58153 | 0.58255 | 0.58154 |
| process[Recruitment].recruitment_multipliers{2017} | 0.55554 | 0.55794 | 0.55554 | 0.55554 | 0.55794 | 0.55554 |
| process[Recruitment].recruitment_multipliers{2018} | 0.93876 | 0.94112 | 0.93875 | 0.93876 | 0.94112 | 0.93875 |
| process[Recruitment].recruitment_multipliers{2019} | 1.41706 | 1.43303 | 1.41707 | 1.41706 | 1.43303 | 1.41707 |
| process[Recruitment].recruitment_multipliers{2020} | 0.39340 | 0.38899 | 0.39339 | 0.39340 | 0.38899 | 0.39339 |
| process[Recruitment].recruitment_multipliers{2021} | 0.47898 | 0.47810 | 0.47900 | 0.47898 | 0.47810 | 0.47900 |
| process[Recruitment].recruitment_multipliers{2022} | 0.54989 | 0.54986 | 0.54982 | 0.54989 | 0.54986 | 0.54982 |
| selectivity[maturity].a50 | 30.11660 | 30.11660 | 30.11660 | 30.11660 | 30.11660 | 30.11660 |
| selectivity[maturity].ato95 | 7.09305 | 7.09305 | 7.09305 | 7.09305 | 7.09305 | 7.09305 |
| selectivity[FishingSel_1_male].a50 | 43.92180 | 44.21950 | 43.92180 | 43.92180 | 44.21950 | 43.92180 |
| selectivity[FishingSel_1_male].ato95 | 16.36960 | 16.52750 | 16.36950 | 16.36960 | 16.52750 | 16.36950 |
| selectivity[FishingSel_1_male].alpha | 0.85518 | 0.85424 | 0.85518 | 0.85518 | 0.85424 | 0.85518 |
| selectivity[FishingSel_2_female].a50 | 45.42970 | 45.77970 | 45.42960 | 45.42970 | 45.77970 | 45.42960 |
| selectivity[FishingSel_2_female].ato95 | 20.02320 | 20.18150 | 20.02320 | 20.02320 | 20.18150 | 20.02320 |
| selectivity[FishingSel_2_male].alpha | 0.50661 | 0.50648 | 0.50662 | 0.50661 | 0.50648 | 0.50662 |
| selectivity[TrawlSurveySel_1_female].a50 | 30.69370 | 31.00400 | 30.69360 | 30.69370 | 31.00400 | 30.69360 |
| selectivity[TrawlSurveySel_1_female].ato95 | 20.77060 | 21.74160 | 20.77030 | 20.77060 | 21.74160 | 20.77030 |
| selectivity[TrawlSurveySel_1_male].alpha | 1.12877 | 1.12748 | 1.12876 | 1.12877 | 1.12748 | 1.12876 |
| selectivity[TrawlSurveySel_2_female].a50 | 36.98430 | 37.22380 | 36.98430 | 36.98430 | 37.22380 | 36.98430 |
| selectivity[TrawlSurveySel_2_female].ato95 | 16.94280 | 17.18710 | 16.94280 | 16.94280 | 17.18710 | 16.94280 |
| selectivity[TrawlSurveySel_2_male].alpha | 1.08687 | 1.08665 | 1.08687 | 1.08687 | 1.08665 | 1.08687 |
| growth_increment[male_growth].g_alpha | 13.85690 | 13.83850 | 13.85690 | 13.85690 | 13.83850 | 13.85690 |
| growth_increment[male_growth].g_beta | 2.84680 | 2.74853 | 2.84680 | 2.84680 | 2.74853 | 2.84680 |
| growth_increment[female_growth].g_alpha | 13.42240 | 13.42640 | 13.42240 | 13.42240 | 13.42640 | 13.42240 |
| growth_increment[female_growth].g_beta | 0.92508 | 0.80358 | 0.92508 | 0.92508 | 0.80358 | 0.92508 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
|---|---|---|---|---|---|---|
| process[Recruitment].b0 | 0.000 | -0.098 | 0.000 | 0.000 | -0.098 | 0.000 |
| growth_increment[female_growth].min_sigma | 0.000 | -1.722 | -0.000 | 0.000 | -1.722 | -0.000 |
| process[Recruitment].recruitment_multipliers{1986} | 0.000 | 0.161 | -0.003 | 0.000 | 0.161 | -0.003 |
| process[Recruitment].recruitment_multipliers{1987} | 0.000 | 0.191 | -0.001 | 0.000 | 0.191 | -0.001 |
| process[Recruitment].recruitment_multipliers{1988} | 0.000 | 1.023 | 0.001 | 0.000 | 1.023 | 0.001 |
| process[Recruitment].recruitment_multipliers{1989} | 0.000 | 3.646 | 0.005 | 0.000 | 3.646 | 0.005 |
| process[Recruitment].recruitment_multipliers{1990} | 0.000 | -2.234 | -0.000 | 0.000 | -2.234 | -0.000 |
| process[Recruitment].recruitment_multipliers{1991} | 0.000 | 1.028 | -0.003 | 0.000 | 1.028 | -0.003 |
| process[Recruitment].recruitment_multipliers{1992} | 0.000 | 1.033 | 0.001 | 0.000 | 1.033 | 0.001 |
| process[Recruitment].recruitment_multipliers{1993} | 0.000 | 0.518 | -0.000 | 0.000 | 0.518 | -0.000 |
| process[Recruitment].recruitment_multipliers{1994} | 0.000 | -0.238 | -0.001 | 0.000 | -0.238 | -0.001 |
| process[Recruitment].recruitment_multipliers{1995} | 0.000 | 0.976 | 0.001 | 0.000 | 0.976 | 0.001 |
| process[Recruitment].recruitment_multipliers{1996} | 0.000 | -0.550 | -0.002 | 0.000 | -0.550 | -0.002 |
| process[Recruitment].recruitment_multipliers{1997} | 0.000 | -0.386 | 0.001 | 0.000 | -0.386 | 0.001 |
| process[Recruitment].recruitment_multipliers{1998} | 0.000 | -0.192 | -0.000 | 0.000 | -0.192 | -0.000 |
| process[Recruitment].recruitment_multipliers{1999} | 0.000 | 0.277 | -0.001 | 0.000 | 0.277 | -0.001 |
| process[Recruitment].recruitment_multipliers{2000} | 0.000 | -0.521 | -0.001 | 0.000 | -0.521 | -0.001 |
| process[Recruitment].recruitment_multipliers{2001} | 0.000 | -0.567 | 0.000 | 0.000 | -0.567 | 0.000 |
| process[Recruitment].recruitment_multipliers{2002} | 0.000 | -0.786 | -0.000 | 0.000 | -0.786 | -0.000 |
| process[Recruitment].recruitment_multipliers{2003} | 0.000 | 0.356 | -0.001 | 0.000 | 0.356 | -0.001 |
| process[Recruitment].recruitment_multipliers{2004} | 0.000 | -0.631 | 0.001 | 0.000 | -0.631 | 0.001 |
| process[Recruitment].recruitment_multipliers{2005} | 0.000 | 0.140 | -0.001 | 0.000 | 0.140 | -0.001 |
| process[Recruitment].recruitment_multipliers{2006} | 0.000 | -0.066 | 0.000 | 0.000 | -0.066 | 0.000 |
| process[Recruitment].recruitment_multipliers{2007} | 0.000 | -0.401 | -0.000 | 0.000 | -0.401 | -0.000 |
| process[Recruitment].recruitment_multipliers{2008} | 0.000 | -0.957 | 0.001 | 0.000 | -0.957 | 0.001 |
| process[Recruitment].recruitment_multipliers{2009} | 0.000 | -0.398 | -0.002 | 0.000 | -0.398 | -0.002 |
| process[Recruitment].recruitment_multipliers{2010} | 0.000 | 0.140 | 0.000 | 0.000 | 0.140 | 0.000 |
| process[Recruitment].recruitment_multipliers{2011} | 0.000 | -1.437 | -0.000 | 0.000 | -1.437 | -0.000 |
| process[Recruitment].recruitment_multipliers{2012} | 0.000 | 1.414 | -0.001 | 0.000 | 1.414 | -0.001 |
| process[Recruitment].recruitment_multipliers{2013} | 0.000 | -0.663 | 0.002 | 0.000 | -0.663 | 0.002 |
| process[Recruitment].recruitment_multipliers{2014} | 0.000 | -0.640 | -0.004 | 0.000 | -0.640 | -0.004 |
| process[Recruitment].recruitment_multipliers{2015} | 0.000 | 0.473 | 0.002 | 0.000 | 0.473 | 0.002 |
| process[Recruitment].recruitment_multipliers{2016} | 0.000 | -0.175 | -0.001 | 0.000 | -0.175 | -0.001 |
| process[Recruitment].recruitment_multipliers{2017} | 0.000 | -0.431 | 0.000 | 0.000 | -0.431 | 0.000 |
| process[Recruitment].recruitment_multipliers{2018} | 0.000 | -0.252 | 0.000 | 0.000 | -0.252 | 0.000 |
| process[Recruitment].recruitment_multipliers{2019} | 0.000 | -1.127 | -0.001 | 0.000 | -1.127 | -0.001 |
| process[Recruitment].recruitment_multipliers{2020} | 0.000 | 1.121 | 0.003 | 0.000 | 1.121 | 0.003 |
| process[Recruitment].recruitment_multipliers{2021} | 0.000 | 0.183 | -0.004 | 0.000 | 0.183 | -0.004 |
| process[Recruitment].recruitment_multipliers{2022} | 0.000 | 0.005 | 0.012 | 0.000 | 0.005 | 0.012 |
| selectivity[maturity].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| selectivity[maturity].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| selectivity[FishingSel_1_male].a50 | 0.000 | -0.678 | 0.000 | 0.000 | -0.678 | 0.000 |
| selectivity[FishingSel_1_male].ato95 | 0.000 | -0.965 | 0.001 | 0.000 | -0.965 | 0.001 |
| selectivity[FishingSel_1_male].alpha | 0.000 | 0.110 | 0.000 | 0.000 | 0.110 | 0.000 |
| selectivity[FishingSel_2_female].a50 | 0.000 | -0.770 | 0.000 | 0.000 | -0.770 | 0.000 |
| selectivity[FishingSel_2_female].ato95 | 0.000 | -0.791 | 0.000 | 0.000 | -0.791 | 0.000 |
| selectivity[FishingSel_2_male].alpha | 0.000 | 0.027 | -0.000 | 0.000 | 0.027 | -0.000 |
| selectivity[TrawlSurveySel_1_female].a50 | 0.000 | -1.011 | 0.000 | 0.000 | -1.011 | 0.000 |
| selectivity[TrawlSurveySel_1_female].ato95 | 0.000 | -4.675 | 0.001 | 0.000 | -4.675 | 0.001 |
| selectivity[TrawlSurveySel_1_male].alpha | 0.000 | 0.114 | 0.001 | 0.000 | 0.114 | 0.001 |
| selectivity[TrawlSurveySel_2_female].a50 | 0.000 | -0.648 | 0.000 | 0.000 | -0.648 | 0.000 |
| selectivity[TrawlSurveySel_2_female].ato95 | 0.000 | -1.442 | 0.000 | 0.000 | -1.442 | 0.000 |
| selectivity[TrawlSurveySel_2_male].alpha | 0.000 | 0.020 | 0.000 | 0.000 | 0.020 | 0.000 |
| growth_increment[male_growth].g_alpha | 0.000 | 0.133 | 0.000 | 0.000 | 0.133 | 0.000 |
| growth_increment[male_growth].g_beta | 0.000 | 3.452 | 0.000 | 0.000 | 3.452 | 0.000 |
| growth_increment[female_growth].g_alpha | 0.000 | -0.030 | 0.000 | 0.000 | -0.030 | 0.000 |
| growth_increment[female_growth].g_beta | 0.000 | 13.134 | -0.000 | 0.000 | 13.134 | -0.000 |
| Component | Base_Model | Sensitivity_1 |
|---|---|---|
| CPUE-Trawl_1 | 17.230 | 17.230 |
| TrawlSurvey_1 | -5.390 | -5.390 |
| TrawlSurvey_2 | 15.850 | 15.850 |
| TrawlSurveyProportionAtLength_1 | 675.000 | 675.000 |
| TrawlSurveyProportionAtLength_2 | 878.300 | 878.300 |
| CommercialCatchLength_1 | 2022.000 | 2022.000 |
| CommercialCatchLength_2 | 1470.000 | 1470.000 |
| CommercialCatchLength_3 | 1434.000 | 1434.000 |
| Cryer_Oliver_maturity | 84.060 | 84.060 |
| 1997-recaptures1-1 | 31.160 | 31.160 |
| 1997-recaptures1-2 | 61.740 | 61.740 |
| 1997-recaptures2-1 | 15.140 | 15.140 |
| 1997-recaptures2-2 | 34.650 | 34.650 |
| 1997-recaptures2-3 | 27.940 | 27.940 |
| 1997-recaptures3-1 | 22.850 | 22.850 |
| 1997-recaptures3-2 | 65.330 | 65.330 |
| 1997-recaptures3-3 | 58.950 | 58.950 |
| prior_on_initialization.B0 | 7.652 | 7.652 |
| prior_on_growth[1].minsigma_male | 0.000 | 0.000 |
| prior_on_recruitment.YCS | -5.344 | -5.344 |
| prior_on_maturity_props.all | 0.000 | 0.000 |
| prior_on_selectivity[FishingSel_1].female | 0.000 | 0.000 |
| prior_on_selectivity[FishingSel_2].female | 0.000 | 0.000 |
| prior_on_selectivity[TrawlSurveySel_1].female | 0.000 | 0.000 |
| prior_on_selectivity[TrawlSurveySel_2].female | 0.000 | 0.000 |
| prior_on_growth[1].g_male | 0.000 | 0.000 |
| prior_on_growth[1].g_female | 0.000 | 0.000 |
| prior_on_q_CPUE-Commercialq_1 | -6.457 | -6.457 |
| prior_on_q_TrawlSurveyq_1 | -2.477 | -2.477 |
| prior_on_q_TrawlSurveyq_2 | -2.349 | -2.349 |
| Penalty_Trawl_1_Catch | 0.000 | 0.000 |
| Penalty_Trawl_2_Catch | 0.000 | 0.000 |
| Penalty_Trawl_3_Catch | 0.000 | 0.000 |
| Total | 6899.000 | 6899.000 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
|---|---|---|---|---|---|---|
| observation->CPUE-Trawl_1->1990 | -2.370 | -2.374 | -2.370 | -2.370 | -2.374 | -2.370 |
| observation->CPUE-Trawl_1->1991 | 5.552 | 5.528 | 5.552 | 5.552 | 5.528 | 5.552 |
| observation->CPUE-Trawl_1->1992 | -0.556 | -0.527 | -0.556 | -0.556 | -0.527 | -0.556 |
| observation->CPUE-Trawl_1->1993 | 8.941 | 8.869 | 8.941 | 8.941 | 8.869 | 8.941 |
| observation->CPUE-Trawl_1->1994 | -0.466 | -0.440 | -0.466 | -0.466 | -0.440 | -0.466 |
| observation->CPUE-Trawl_1->1995 | 5.854 | 5.819 | 5.854 | 5.854 | 5.819 | 5.854 |
| observation->CPUE-Trawl_1->1996 | -2.204 | -2.208 | -2.204 | -2.204 | -2.208 | -2.204 |
| observation->CPUE-Trawl_1->1997 | 2.870 | 2.865 | 2.870 | 2.870 | 2.865 | 2.870 |
| observation->CPUE-Trawl_1->1998 | -2.241 | -2.238 | -2.241 | -2.241 | -2.238 | -2.241 |
| observation->CPUE-Trawl_1->1999 | 7.105 | 7.082 | 7.105 | 7.105 | 7.082 | 7.105 |
| observation->CPUE-Trawl_1->2000 | -1.373 | -1.390 | -1.373 | -1.373 | -1.390 | -1.373 |
| observation->CPUE-Trawl_1->2001 | -0.310 | -0.273 | -0.310 | -0.310 | -0.273 | -0.310 |
| observation->CPUE-Trawl_1->2002 | -0.305 | -0.342 | -0.305 | -0.305 | -0.342 | -0.305 |
| observation->CPUE-Trawl_1->2003 | -2.020 | -2.028 | -2.020 | -2.020 | -2.028 | -2.020 |
| observation->CPUE-Trawl_1->2004 | 1.495 | 1.490 | 1.495 | 1.495 | 1.490 | 1.495 |
| observation->CPUE-Trawl_1->2005 | -0.394 | -0.396 | -0.394 | -0.394 | -0.396 | -0.394 |
| observation->CPUE-Trawl_1->2006 | -2.180 | -2.182 | -2.180 | -2.180 | -2.182 | -2.180 |
| observation->CPUE-Trawl_1->2007 | -1.392 | -1.394 | -1.392 | -1.392 | -1.394 | -1.392 |
| observation->CPUE-Trawl_1->2008 | -1.224 | -1.231 | -1.224 | -1.224 | -1.231 | -1.224 |
| observation->CPUE-Trawl_1->2009 | -2.417 | -2.417 | -2.417 | -2.417 | -2.417 | -2.417 |
| observation->CPUE-Trawl_1->2010 | -0.496 | -0.509 | -0.496 | -0.496 | -0.509 | -0.496 |
| observation->CPUE-Trawl_1->2011 | 1.668 | 1.641 | 1.668 | 1.668 | 1.641 | 1.668 |
| observation->CPUE-Trawl_1->2012 | 4.982 | 4.943 | 4.982 | 4.982 | 4.943 | 4.982 |
| observation->CPUE-Trawl_1->2013 | 2.770 | 2.803 | 2.770 | 2.770 | 2.803 | 2.770 |
| observation->CPUE-Trawl_1->2014 | -0.613 | -0.606 | -0.613 | -0.613 | -0.606 | -0.613 |
| observation->CPUE-Trawl_1->2015 | 1.211 | 1.206 | 1.211 | 1.211 | 1.206 | 1.211 |
| observation->CPUE-Trawl_1->2016 | 2.468 | 2.478 | 2.468 | 2.468 | 2.478 | 2.468 |
| observation->CPUE-Trawl_1->2017 | -0.629 | -0.633 | -0.629 | -0.629 | -0.633 | -0.629 |
| observation->CPUE-Trawl_1->2018 | -2.289 | -2.294 | -2.289 | -2.289 | -2.294 | -2.289 |
| observation->CPUE-Trawl_1->2019 | -0.259 | -0.239 | -0.259 | -0.259 | -0.239 | -0.259 |
| observation->CPUE-Trawl_1->2020 | -1.731 | -1.729 | -1.731 | -1.731 | -1.729 | -1.731 |
| observation->CPUE-Trawl_1->2021 | -2.221 | -2.221 | -2.221 | -2.221 | -2.221 | -2.221 |
| observation->TrawlSurvey_1->1993 | -1.801 | -1.799 | -1.801 | -1.801 | -1.799 | -1.801 |
| observation->TrawlSurvey_1->1994 | -1.820 | -1.820 | -1.820 | -1.820 | -1.820 | -1.820 |
| observation->TrawlSurvey_1->1995 | -1.721 | -1.721 | -1.721 | -1.721 | -1.721 | -1.721 |
| observation->TrawlSurvey_1->2004 | -0.048 | -0.038 | -0.048 | -0.048 | -0.038 | -0.048 |
| observation->TrawlSurvey_2->2003 | -0.491 | -0.490 | -0.491 | -0.491 | -0.490 | -0.491 |
| observation->TrawlSurvey_2->2005 | -0.901 | -0.901 | -0.901 | -0.901 | -0.901 | -0.901 |
| observation->TrawlSurvey_2->2006 | -0.988 | -0.988 | -0.988 | -0.988 | -0.988 | -0.988 |
| observation->TrawlSurvey_2->2012 | 8.206 | 8.197 | 8.206 | 8.206 | 8.197 | 8.206 |
| observation->TrawlSurvey_2->2015 | -1.238 | -1.238 | -1.238 | -1.238 | -1.238 | -1.238 |
| observation->TrawlSurvey_2->2018 | 12.343 | 12.321 | 12.343 | 12.343 | 12.321 | 12.343 |
| observation->TrawlSurvey_2->2021 | -1.079 | -1.079 | -1.079 | -1.079 | -1.079 | -1.079 |
| observation->TrawlSurveyProportionAtLength_1->1993 | 140.116 | 140.149 | 140.117 | 140.116 | 140.149 | 140.117 |
| observation->TrawlSurveyProportionAtLength_1->1994 | 136.075 | 136.211 | 136.075 | 136.075 | 136.211 | 136.075 |
| observation->TrawlSurveyProportionAtLength_1->1995 | 134.809 | 134.741 | 134.809 | 134.809 | 134.741 | 134.809 |
| observation->TrawlSurveyProportionAtLength_1->2004 | 136.719 | 136.752 | 136.719 | 136.719 | 136.752 | 136.719 |
| observation->TrawlSurveyProportionAtLength_1->2021 | 127.242 | 127.234 | 127.242 | 127.242 | 127.234 | 127.242 |
| observation->TrawlSurveyProportionAtLength_2->2003 | 122.195 | 122.196 | 122.195 | 122.195 | 122.196 | 122.195 |
| observation->TrawlSurveyProportionAtLength_2->2005 | 127.870 | 127.854 | 127.870 | 127.870 | 127.854 | 127.870 |
| observation->TrawlSurveyProportionAtLength_2->2006 | 132.110 | 131.974 | 132.110 | 132.110 | 131.974 | 132.110 |
| observation->TrawlSurveyProportionAtLength_2->2012 | 131.462 | 131.375 | 131.462 | 131.462 | 131.375 | 131.462 |
| observation->TrawlSurveyProportionAtLength_2->2015 | 119.936 | 119.991 | 119.936 | 119.936 | 119.991 | 119.936 |
| observation->TrawlSurveyProportionAtLength_2->2018 | 125.164 | 125.341 | 125.164 | 125.164 | 125.341 | 125.164 |
| observation->TrawlSurveyProportionAtLength_2->2021 | 119.526 | 119.560 | 119.526 | 119.526 | 119.560 | 119.526 |
| observation->CommercialCatchLength_1->1992 | 68.899 | 68.873 | 68.899 | 68.899 | 68.873 | 68.899 |
| observation->CommercialCatchLength_1->1993 | 85.879 | 85.725 | 85.879 | 85.879 | 85.725 | 85.879 |
| observation->CommercialCatchLength_1->1996 | 147.667 | 147.860 | 147.667 | 147.667 | 147.860 | 147.667 |
| observation->CommercialCatchLength_1->1997 | 84.247 | 84.124 | 84.247 | 84.247 | 84.124 | 84.247 |
| observation->CommercialCatchLength_1->1998 | 117.490 | 117.428 | 117.490 | 117.490 | 117.428 | 117.490 |
| observation->CommercialCatchLength_1->1999 | 139.920 | 139.921 | 139.920 | 139.920 | 139.921 | 139.920 |
| observation->CommercialCatchLength_1->2000 | 115.382 | 115.345 | 115.382 | 115.382 | 115.345 | 115.382 |
| observation->CommercialCatchLength_1->2001 | 123.573 | 123.520 | 123.573 | 123.573 | 123.520 | 123.573 |
| observation->CommercialCatchLength_1->2002 | 94.877 | 94.777 | 94.877 | 94.877 | 94.777 | 94.877 |
| observation->CommercialCatchLength_1->2003 | 152.191 | 151.986 | 152.191 | 152.191 | 151.986 | 152.191 |
| observation->CommercialCatchLength_1->2005 | 93.313 | 93.192 | 93.313 | 93.313 | 93.192 | 93.313 |
| observation->CommercialCatchLength_1->2008 | 154.113 | 154.375 | 154.113 | 154.113 | 154.375 | 154.113 |
| observation->CommercialCatchLength_1->2011 | 112.774 | 112.747 | 112.774 | 112.774 | 112.747 | 112.774 |
| observation->CommercialCatchLength_1->2012 | 153.745 | 153.501 | 153.745 | 153.745 | 153.501 | 153.745 |
| observation->CommercialCatchLength_1->2013 | 109.472 | 109.380 | 109.472 | 109.472 | 109.380 | 109.472 |
| observation->CommercialCatchLength_1->2014 | 93.145 | 93.155 | 93.145 | 93.145 | 93.155 | 93.145 |
| observation->CommercialCatchLength_1->2020 | 174.821 | 174.725 | 174.821 | 174.821 | 174.725 | 174.821 |
| observation->CommercialCatchLength_2->1994 | 101.844 | 101.868 | 101.844 | 101.844 | 101.868 | 101.844 |
| observation->CommercialCatchLength_2->1995 | 109.767 | 109.724 | 109.767 | 109.767 | 109.724 | 109.767 |
| observation->CommercialCatchLength_2->1997 | 116.900 | 116.834 | 116.900 | 116.900 | 116.834 | 116.900 |
| observation->CommercialCatchLength_2->1998 | 155.404 | 156.498 | 155.403 | 155.404 | 156.498 | 155.403 |
| observation->CommercialCatchLength_2->1999 | 124.131 | 124.045 | 124.131 | 124.131 | 124.045 | 124.131 |
| observation->CommercialCatchLength_2->2007 | 131.024 | 130.931 | 131.024 | 131.024 | 130.931 | 131.024 |
| observation->CommercialCatchLength_2->2008 | 158.478 | 158.829 | 158.478 | 158.478 | 158.829 | 158.478 |
| observation->CommercialCatchLength_2->2009 | 177.935 | 177.854 | 177.935 | 177.935 | 177.854 | 177.935 |
| observation->CommercialCatchLength_2->2012 | 138.105 | 138.672 | 138.105 | 138.105 | 138.672 | 138.105 |
| observation->CommercialCatchLength_2->2019 | 141.424 | 141.526 | 141.424 | 141.424 | 141.526 | 141.424 |
| observation->CommercialCatchLength_2->2021 | 114.547 | 114.412 | 114.547 | 114.547 | 114.412 | 114.547 |
| observation->CommercialCatchLength_3->1991 | 137.377 | 137.256 | 137.377 | 137.377 | 137.256 | 137.377 |
| observation->CommercialCatchLength_3->1993 | 90.372 | 90.404 | 90.372 | 90.372 | 90.404 | 90.372 |
| observation->CommercialCatchLength_3->1994 | 122.548 | 122.354 | 122.548 | 122.548 | 122.354 | 122.548 |
| observation->CommercialCatchLength_3->1995 | 104.971 | 105.142 | 104.971 | 104.971 | 105.142 | 104.971 |
| observation->CommercialCatchLength_3->1996 | 82.543 | 82.374 | 82.543 | 82.543 | 82.374 | 82.543 |
| observation->CommercialCatchLength_3->1997 | 107.868 | 107.733 | 107.868 | 107.868 | 107.733 | 107.868 |
| observation->CommercialCatchLength_3->2000 | 116.229 | 116.227 | 116.229 | 116.229 | 116.227 | 116.229 |
| observation->CommercialCatchLength_3->2001 | 179.354 | 178.915 | 179.354 | 179.354 | 178.915 | 179.354 |
| observation->CommercialCatchLength_3->2007 | 129.099 | 128.996 | 129.099 | 129.099 | 128.996 | 129.099 |
| observation->CommercialCatchLength_3->2008 | 111.241 | 111.297 | 111.241 | 111.241 | 111.297 | 111.241 |
| observation->CommercialCatchLength_3->2010 | 138.651 | 138.500 | 138.651 | 138.651 | 138.500 | 138.651 |
| observation->CommercialCatchLength_3->2011 | 113.720 | 113.605 | 113.720 | 113.720 | 113.605 | 113.720 |
| observation->Cryer_Oliver_maturity | 84.057 | 84.057 | 84.057 | 84.057 | 84.057 | 84.057 |
| observation->1997_recaptures1_1 | 31.165 | 31.189 | 31.165 | 31.165 | 31.189 | 31.165 |
| observation->1997_recaptures1_2 | 61.740 | 61.740 | 61.740 | 61.740 | 61.740 | 61.740 |
| observation->1997_recaptures2_1 | 15.136 | 15.133 | 15.136 | 15.136 | 15.133 | 15.136 |
| observation->1997_recaptures2_2 | 34.649 | 34.639 | 34.649 | 34.649 | 34.639 | 34.649 |
| observation->1997_recaptures2_3 | 27.938 | 27.938 | 27.938 | 27.938 | 27.938 | 27.938 |
| observation->1997_recaptures3_1 | 22.851 | 22.821 | 22.851 | 22.851 | 22.821 | 22.851 |
| observation->1997_recaptures3_2 | 65.328 | 65.499 | 65.328 | 65.328 | 65.499 | 65.328 |
| observation->1997_recaptures3_3 | 58.948 | 58.946 | 58.948 | 58.948 | 58.946 | 58.948 |
| penalty->CatchMustBeTaken | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->B0->process[Recruitment].b0 | 7.652 | 7.653 | 7.652 | 7.652 | 7.653 | 7.652 |
| prior->growth_min_sigma->growth_increment[female_growth].min_sigma | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->YCS->process[Recruitment].recruitment_multipliers{1986} | 0.297 | 0.300 | 0.297 | 0.297 | 0.300 | 0.297 |
| prior->YCS->process[Recruitment].recruitment_multipliers{1987} | 0.161 | 0.164 | 0.161 | 0.161 | 0.164 | 0.161 |
| prior->YCS->process[Recruitment].recruitment_multipliers{1988} | -0.155 | -0.143 | -0.155 | -0.155 | -0.143 | -0.155 |
| prior->YCS->process[Recruitment].recruitment_multipliers{1989} | -0.399 | -0.397 | -0.399 | -0.399 | -0.397 | -0.399 |
| prior->YCS->process[Recruitment].recruitment_multipliers{1990} | 3.324 | 3.420 | 3.324 | 3.324 | 3.420 | 3.324 |
| prior->YCS->process[Recruitment].recruitment_multipliers{1991} | -0.383 | -0.385 | -0.383 | -0.383 | -0.385 | -0.383 |
| prior->YCS->process[Recruitment].recruitment_multipliers{1992} | -0.389 | -0.391 | -0.389 | -0.389 | -0.391 | -0.389 |
| prior->YCS->process[Recruitment].recruitment_multipliers{1993} | -0.390 | -0.389 | -0.390 | -0.390 | -0.389 | -0.390 |
| prior->YCS->process[Recruitment].recruitment_multipliers{1994} | -0.008 | -0.011 | -0.008 | -0.008 | -0.011 | -0.008 |
| prior->YCS->process[Recruitment].recruitment_multipliers{1995} | -0.241 | -0.232 | -0.241 | -0.241 | -0.232 | -0.241 |
| prior->YCS->process[Recruitment].recruitment_multipliers{1996} | -0.265 | -0.270 | -0.265 | -0.265 | -0.270 | -0.265 |
| prior->YCS->process[Recruitment].recruitment_multipliers{1997} | -0.209 | -0.213 | -0.209 | -0.209 | -0.213 | -0.209 |
| prior->YCS->process[Recruitment].recruitment_multipliers{1998} | -0.387 | -0.387 | -0.387 | -0.387 | -0.387 | -0.387 |
| prior->YCS->process[Recruitment].recruitment_multipliers{1999} | -0.216 | -0.213 | -0.216 | -0.216 | -0.213 | -0.216 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2000} | -0.387 | -0.388 | -0.387 | -0.387 | -0.388 | -0.387 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2001} | -0.398 | -0.398 | -0.398 | -0.398 | -0.398 | -0.398 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2002} | -0.392 | -0.390 | -0.392 | -0.392 | -0.390 | -0.392 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2003} | -0.190 | -0.186 | -0.190 | -0.190 | -0.186 | -0.190 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2004} | -0.390 | -0.388 | -0.390 | -0.390 | -0.388 | -0.390 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2005} | -0.363 | -0.362 | -0.363 | -0.363 | -0.362 | -0.363 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2006} | -0.384 | -0.385 | -0.384 | -0.384 | -0.385 | -0.384 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2007} | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2008} | 0.031 | 0.045 | 0.031 | 0.031 | 0.045 | 0.031 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2009} | -0.397 | -0.398 | -0.397 | -0.397 | -0.398 | -0.397 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2010} | -0.114 | -0.116 | -0.114 | -0.114 | -0.116 | -0.114 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2011} | -0.076 | -0.058 | -0.076 | -0.076 | -0.058 | -0.076 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2012} | -0.392 | -0.389 | -0.392 | -0.392 | -0.389 | -0.392 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2013} | -0.368 | -0.365 | -0.368 | -0.368 | -0.365 | -0.368 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2014} | -0.348 | -0.351 | -0.348 | -0.348 | -0.351 | -0.348 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2015} | -0.377 | -0.378 | -0.377 | -0.377 | -0.378 | -0.377 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2016} | -0.395 | -0.395 | -0.395 | -0.395 | -0.395 | -0.395 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2017} | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2018} | -0.040 | -0.037 | -0.040 | -0.040 | -0.037 | -0.040 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2019} | 0.725 | 0.752 | 0.725 | 0.725 | 0.752 | 0.725 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2020} | -0.258 | -0.249 | -0.258 | -0.258 | -0.249 | -0.258 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2021} | -0.375 | -0.374 | -0.375 | -0.375 | -0.374 | -0.375 |
| prior->YCS->process[Recruitment].recruitment_multipliers{2022} | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 |
| prior->maturity_a50->selectivity[maturity].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->maturity_ato95->selectivity[maturity].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->FishingSel_1_a50->selectivity[FishingSel_1_male].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->FishingSel_1_ato95->selectivity[FishingSel_1_male].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->FishingSel_1_male_alpha->selectivity[FishingSel_1_male].alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->FishingSel_2_a50->selectivity[FishingSel_2_female].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->FishingSel_2_ato95->selectivity[FishingSel_2_female].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->FishingSel_2_male_alpha->selectivity[FishingSel_2_male].alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->TrawlSurveySel_1_a50->selectivity[TrawlSurveySel_1_female].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->TrawlSurveySel_1_ato95->selectivity[TrawlSurveySel_1_female].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->TrawlSurveySel_1_male_alpha->selectivity[TrawlSurveySel_1_male].alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->TrawlSurveySel_2_a50->selectivity[TrawlSurveySel_2_female].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->TrawlSurveySel_2_ato95->selectivity[TrawlSurveySel_2_female].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->TrawlSurveySel_2_male_alpha->selectivity[TrawlSurveySel_2_male].alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->g_alpha_male->growth_increment[male_growth].g_alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->g_beta_male->growth_increment[male_growth].g_beta | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->g_alpha_female->growth_increment[female_growth].g_alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->g_beta_female->growth_increment[female_growth].g_beta | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| additional_prior->CPUE-Commercialq_1 | -6.457 | -6.436 | -6.457 | -6.457 | -6.436 | -6.457 |
| additional_prior->TrawlSurveyq_1 | -2.477 | -2.460 | -2.477 | -2.477 | -2.460 | -2.477 |
| additional_prior->TrawlSurveyq_2 | -2.349 | -2.336 | -2.349 | -2.349 | -2.336 | -2.349 |
| total_score | 6898.790 | 6898.740 | 6898.790 | 6898.790 | 6898.740 | 6898.790 |
## [1] "CASAL base model convergence information"
## [1] "Minimiser convergence threshold: 2e-06"
## [2] "Minimiser achieved convergence after 119 quasi-Newton iterations using 126 objective function evaluations"
## [1] ""
## [1] "CASAL sensitivity 1 model convergence information"
## [1] "Minimiser convergence threshold: 1e-08"
## [2] "Minimiser achieved convergence after 134 quasi-Newton iterations using 153 objective function evaluations"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model convergence information"
## [1] "fmm: have converged: t = 1.64873e-06 f = 6898.79"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model convergence information"
## [1] "fmm: have converged: t = 1.83524e-06 f = 6898.74"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model convergence information"
## [1] "fmm: have converged: t = 2.30345e-09 f = 6898.79"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model convergence information"
## character(0)
## [1] "CASAL model warnings"
## NULL
## [1] ""
## [1] "CASAL sensitivity 1 model warnings"
## NULL
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model warnings"
## [1] ""
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model warnings"
## [1] ""
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model warnings"
## [1] ""
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model warnings"
## [1] ""
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model warnings"
## [1] ""
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model warnings"
## [1] ""
Time series comparisons with CASAL base model results
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on"
## [1] "Actual catches for Trawl 1 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_off"
## [1] "Actual catches for Trawl 1 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on_low_tol"
## [1] "Actual catches for Trawl 1 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on"
## [1] "Actual catches for Trawl 1 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_off"
## [1] "Actual catches for Trawl 1 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on_low_tol"
## [1] "Actual catches for Trawl 1 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on"
## [1] "Actual catches for Trawl 2 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_off"
## [1] "Actual catches for Trawl 2 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on_low_tol"
## [1] "Actual catches for Trawl 2 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on"
## [1] "Actual catches for Trawl 2 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_off"
## [1] "Actual catches for Trawl 2 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on_low_tol"
## [1] "Actual catches for Trawl 2 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on"
## [1] "Actual catches for Trawl 3 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_off"
## [1] "Actual catches for Trawl 3 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on_low_tol"
## [1] "Actual catches for Trawl 3 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on"
## [1] "Actual catches for Trawl 3 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_off"
## [1] "Actual catches for Trawl 3 match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on_low_tol"
## [1] "Actual catches for Trawl 3 match: yes"
## [1] ""
Derived quantities
SB0, SBcurrent, MSY, F_MSY, others...
Comparison plots
## [1] "CASAL base parameter correlation range (excluding 1.0): -0.9193 0.9407"
## [1] "CASAL sensitivity 1 parameter correlation range (excluding 1.0): -0.9193 0.94"
## [1] "Casal2 betadiff_casal_flags_on parameter correlation range (excluding 1.0): -0.919151 0.940771"
## [1] "Casal2 betadiff_casal_flags_off parameter correlation range (excluding 1.0): -0.922937 0.943642"
## [1] "Casal2 betadiff_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.920111 0.939971"
## [1] "Casal2 adolc_casal_flags_on parameter correlation range (excluding 1.0): -0.919151 0.940771"
## [1] "Casal2 adolc_casal_flags_off parameter correlation range (excluding 1.0): -0.922937 0.943642"
## [1] "Casal2 adolc_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.920111 0.939971"